PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID MDP0000157506
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Maleae; Malus
Family MYB
Protein Properties Length: 328aa    MW: 36891.2 Da    PI: 6.952
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
MDP0000157506genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.42.1e-151360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+l + ++ +G g+W++     g+ R++k+c++rw +yl
    MDP0000157506 13 RGLWSPEEDEKLRKHITTHGHGSWSSLGVLAGLQRCGKSCRLRWINYL 60
                     788*******************************************97 PP

2Myb_DNA-binding56.28e-1866109146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg++T+eE++ ++d+++ lG++ W+ Ia++++ gRt++++k++w++
    MDP0000157506  66 RGSFTPEEEQTIIDVHRILGNK-WAQIAKHLP-GRTDNEVKNFWNS 109
                      89********************.*********.***********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.2E-22561IPR009057Homeodomain-like
PROSITE profilePS5129415.348860IPR017930Myb domain
SuperFamilySSF466896.79E-2910107IPR009057Homeodomain-like
SMARTSM007176.8E-111262IPR001005SANT/Myb domain
PfamPF002497.6E-131360IPR001005SANT/Myb domain
CDDcd001676.70E-91660No hitNo description
PROSITE profilePS5129426.58561115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.4E-2662115IPR009057Homeodomain-like
SMARTSM007178.2E-1665113IPR001005SANT/Myb domain
PfamPF002492.0E-1666109IPR001005SANT/Myb domain
CDDcd001672.06E-1168108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MGHRCCGKQK VKRGLWSPEE DEKLRKHITT HGHGSWSSLG VLAGLQRCGK SCRLRWINYL  60
RPELRRGSFT PEEEQTIIDV HRILGNKWAQ IAKHLPGRTD NEVKNFWNSC IKKKLMSQGL  120
DPKTHNLLPK SHHQRSASNN AASSSQSPLL QSHNQQQPIS VHLTEINASP INVTLSTDQY  180
HDHGQNPSNA SWTRVDDPTF NDITRLPHQQ STDHSTLINN ISSSSPSSSV NLSVFGLLEN  240
SNIWASGTEP FEAPRILVGE QSKGEEVVLQ QEKDTLLDQM EIKGIEDMDH ASIFESSSVD  300
FSFVESTLMS CGEISQDLNS MCNFAWRY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-28131157108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00350DAPTransfer from AT3G12720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008346072.10.0PREDICTED: transcription repressor MYB6-like isoform X1
RefseqXP_008371964.10.0PREDICTED: transcription repressor MYB6 isoform X1
TrEMBLM5WK831e-136M5WK83_PRUPE; Uncharacterized protein
STRINGVIT_19s0085g00940.t017e-96(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34663267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-83myb domain protein 67